#Brachionus
?????????? ??AUGCA-UG UCUA-AGUA- CAU-ACC--- ------UUAG
#Philodina
?????????? ??AUGCA-UG UCUA-AGUAU GA--ACU--- ------GGUU
#N_pseudemydis
---------- --AUGCA-UG CGUA-AGUGC AU--ACU--- -------UUA
#Centrorhynchus
---------- --AUGCA-UG CGUA-AGUGA AU--ACU--- -------AGC
#Moniliformis
AAAGAUUAAG CCAUGCA-UG CGUA-AGUAC AU--ACU--- -------UUU
#Acanthopleura
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAC AG--ACU--- ------UUCA
#Anemonia
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAU AA--GCA--- ------CUUG
#Anthopleura
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAU AA--GCA--- ------CUUG
#Artemia
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAC AA--GCC--- ------CCCA
#C_elegans
AAAGAUUAAG CCAUGCA-UG CUUU---GAU U----CA--- ---------U
#Eisenia_foetida
AAAGAUUAAG CCAUGCA-UG UCUA-AGCA- CAA-ACC--- ------UUUA
#Eurypelma
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAC AU--GCC--- ------UCCU
#Haemonchus_placei AAAGAUUAAG
CCAUGCA-UG UCG--AGUU- CA--UCU--- --------UU
#Homo_sapiens
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAC GC--ACG--- -----GCCGG
#Lanice
UAAGAUUAAG CCAUGCA-UG UCUA-AGUA- CGA-ACU--- ------CUAA
#Lepidodermella
AAAGAUUAAG CCAUGCA-UG UCUA-AGUA- CAC-ACU--- ------ACGG
#Limicolaria_kambeul AAAGAUUAAG CCAUGCA-UG
UCUA-AGUU- CAC-ACU--- ------GUCU
#Mnemiopsis_leidyi AAAGAUUAAG
CCAUGCA-UG UCUA-AGUA- UAA-ACU--- ------UUUA
#Nematodirus_battus AAAGAUUAAG
CCAUGCA-UG UCG--AGUU- CA--UCU--- --------UU
#Opisthorchis_viverrini AGAGAUUAAG CCAUGCA-UG UCUA-AGUAC
AA--ACC--- ------UUCA
#Pellioditis_typica ??????????
???????-?? ????--???? ?---?----- ---------?
#Placopecten
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAC AU--ACU--- ------UUUU
#Priapulus_caudatus AAAGAUUAAG
CCAUGCA-UG UCUA-AGUA- CAG-ACG--- ------GAUA
#Saccharomyces_cerevisiae AAAGAUUAAG CCAUGCA-UG UCUA-AGUA- UAA-GCA---
-----AUUUA
#Saccoglossus_kowalevskii AAAGAUUAAG CCAUGCA-UG UCUA-AGUA- CGA-GCC---
------UCGG
#Scypha_ciliata
AAAGAUUAAG CCAUGCA-UG UCUA-AGUAU AA--GCG--- ----UUCUUA
#S_purpuratus
AAAGAUUAAG CCAUGCA-UG UGUU-AGUAC AA--GCU--- ------UGUA
#Tenebrio_molitor
AAAGAUUAAG CCAUGCA-UG UCUC-AGUAC AA--GCC--- ------GAAU
#Xenopus_laevis
AAAGAUUAAG CCAUGCA-CG UGUA-AGUAC GC--ACG--- -----GCCGG
#Brachionus
C-AC------ -----GG-U- G-AAACCGCG AA-UGGCUCA UUAAAU-CAG
#Philodina
U-AA------ -----GG-U- G-AAACUGCG UA-CGGCUCA UUACAU-CAG
#N_pseudemydis
U-AU------ -----GG-U- UAAAACCGCG AA-UGGCUCA UUAAAU-AAG
#Centrorhynchus
A-AC------ -----GG-U- GAAAACCGCG AA-UGGCUCA UUAAAU-CAG
#Moniliformis
U-AUG----- -----GU-G- U-AAACCGCG AA-UGGCUCA UUACAU-CAG
#Acanthopleura
C-AU------ -----AG-U- G-AAACCGCA AA-UGGCUCA UUAAAU-CAG
#Anemonia
U-AC------ -----UG-U- G-AAACUGCG AA-UGGCUCA UUAAAU-CAG
#Anthopleura
U-AC------ -----UG-U- G-AAACUGCG AA-UGGCUCA UUAAAU-CAG
#Artemia
G-UG------ -----GG-C- G-AAACCGCG AA-UGGCUCA AUAAAU-CAG
#C_elegans
C-AA------ --------U- G-AAAUU-GC GUACGGCUCA UUAGAG-CAG
#Eisenia_foetida
C-AC------ -----GG-U- G-AAGCUGCG AA-UGGCUCA UUAGGC-CAC
#Eurypelma
U-AA------ -----GG-C- G-AAACCGCG AA-UGGCUCA UUAAAU-CAG
#Haemonchus_placei G-A-------
-----AG-A- G-AAACUGCG AA-CGGCUCA UUAGAG-CAG
#Homo_sapiens
U-AC------ -----AG-U- G-AAACUGCG AA-UGGCUCA UUAAAU-CAG
#Lanice
GCAC------ -----AG-U- G-AAACCGCG AA-UGGCUCA UUAAAC-CAG
#Lepidodermella
C-AA------ -----AG-U- G-AAACUGCG AA-CGGCUCA UUAAAU-CAG
#Limicolaria_kambeul C-AC------ -----GG-U-
G-AAACCGCG AA-UGGCUCA UUAAAU-CAG
#Mnemiopsis_leidyi U-AC------
-----UG-U- G-AAACUGCG AA-UGGCUCA UUA?AU-CAG
#Nematodirus_battus G-AG------
-----A---- G-AAACUGCG AA-CGGCUCA UUAGAG-CAG
#Opisthorchis_viverrini A-AC------ -----GG-U- G-AAACCGCG
AA-UGGCUCA UUAAAU-CAG
#Pellioditis_typica ?-??------
--------?? G-AAACUGCG AA-CGGCUCA UUAGAG-C--
#Placopecten
G-AU------ -----GG-U- G-AAACCGCG AA-UGGCUCA UUAAAU-CAG
#Priapulus_caudatus C-AA------
-----AG-U- G-AAACCGCG AA-UGGCUCA UUAAAU-CAG
#Saccharomyces_cerevisiae U-AC------ -----AG-U- G-AAACUGCG AA-UGGCUCA
UUAAAU-CAG
#Saccoglossus_kowalevskii U-ACAC---- -----GG-U- G-AAACUGCG AA-UGGCUCA
UUAAAU-CAG
#Scypha_ciliata
U-AC------ -----UG-U- G-AAACUGCG AA-UGGCUCA UUAAAU-CAG
#S_purpuratus
U--CA----- -----AG-C- G-AAACUGCG GA-UGGCUCA UUAAAU-CAG
#Tenebrio_molitor
U-AA------ -----GG-U- G-AAACCGCG AA-AGGCUCA UUAAAU-CAG
#Xenopus_laevis
U-AC------ -----AG-U- G-AAACUGCG AA-UGGCUCA UUAAAU-CAG
#Brachionus
UUAU--GGUU CCUUAGAUCG -UUC------ ---------- ---AU-AC-U
#Philodina
CUAUA-ACUU UCUUUGAUCA -UAA------ ---------- ---AU-UC-U
#N_pseudemydis
UCUU--GGUU UAUUAGAUCA -UGCGG---- ---------- ------AU-C
#Centrorhynchus
UUGC--AUUU UACGGUAACU -UGCAG---- ---------- ---------U
#Moniliformis
UUGU--GGUU CAUUAGAUCA -UAUG----- ---------- ------UU-U
#Acanthopleura
UUAU--GAUU UCUUAGAUCG -UACA----- ---------- ---CU-CC-U
#Anemonia
UUAU--CGUU UAUUUGAUUG -UACG----- ---------- --UUU-AC-U
#Anthopleura
UUAU--CGUU UAUUUGAUUG -UACG----- ---------- --UUU-AC-U
#Artemia
UUAU--GGUU CCUUAGAUCG -UACU----- ---------- -AUAU-CC-U
#C_elegans
AUAU--CACC UUAUCCGGG- -AUCC----- ---------- --GGAUCCUC
#Eisenia_foetida
CCAU--GAUU UCUUAGAUCG -UACA----- ---------- ---AU-CC-U
#Eurypelma
UUAU--GGUU CCUUAGAUCG -UACC----- ---------- ---UU-AC-U
#Haemonchus_placei AUGU--CAUU
UAUUCGGAAC -GU------- ---------- ------CC--
#Homo_sapiens
UUAU--GGUU CCUUUGGUCG -CUCGCU--- ---------- CCUCU-CC-C
#Lanice
UUAA--UAUU UCUUAGAUCG -UCCG----- ---------- ---AU-CC-U
#Lepidodermella
UUAU--GGUU UAUUAGAUCG -UGC------ ---------- ---CU-AU-C
#Limicolaria_kambeul UCGA--GGUU CCUUAGAUGA
-CACG----- ---------- ---AU-CC-U
#Mnemiopsis_leidyi UUAU--CGUC
UAUUUGAUUG -UGCC----- ---------- --CUU-AC-U
#Nematodirus_battus AUGU--CAUU
UAUUCGGAAA ---------- ---------- ---AU-CC-U
#Opisthorchis_viverrini CUAU--GGUU CCUUGGAUCG -UACA-----
---------- ----U-AC-U
#Pellioditis_typica UUAU-ACUAA
GCUAGCA-CC ---------- ---------- ---UG-CC-U
#Placopecten
UUAU--GGUU CCUUAGAUCG -UACG----- ---------- ---AU-CC-U
#Priapulus_caudatus UUAU--GGUU
CCUUAGAUCU -UACU----- ---------- ---AU-CC-U
#Saccharomyces_cerevisiae UUAU--CGUU UAUUUGAUAG -UUCC----- ----------
--UUU-AC-U
#Saccoglossus_kowalevskii UUAU--GGUU CCUUUGAUCG -UUAC----- ----------
---CC-CU-U
#Scypha_ciliata
UUAU--AGUU UAUUUGAUGU -UGAC----- ---------- ---UU-AC-U
#S_purpuratus
UCAU--GGUU CCUUGGAACG -AGUU----- ---------- ---GC-CC-U
#Tenebrio_molitor
UUAU--GGUU CCUUAGAUCG -UACC----- ---------- -CACA-UU-U
#Xenopus_laevis
UUAU--GGUU CCUUUGAUCG -CUCC----- ---------- -AUCU-GU-U
#Brachionus
ACAUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AA-----AAA
#Philodina
AAAUGGAAUA ACCGAGGAAA A-GCCUGGGC UAAUACAUGC G------AAA
#N_pseudemydis
AUAUGG-AUA ACUGUGGAAA A-UCUAGAGC UAAUACAUGC CA-----CGA
#Centrorhynchus
UCGUGG-AUA ACUGUGGAAA A-CCUAGAGC UAAUACAUGC AC-----AAA
#Moniliformis
AAAUGG-AUA ACUGUGGCAA A-UCUAGAGC UAAUACAUGU UU----ACAA
#Acanthopleura
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGA CG----UUCA
#Anemonia
ACUUGG-AUA ACCGUGGUAA U-UCUAGAGC UAAUACAUGC GA-----AGA
#Anthopleura
ACUUGG-AUA ACCGUGGUAA U-UCUAGAGC UAAUACAUGC GA-----AAA
#Artemia
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AC----AAUA
#C_elegans
AUAUGG-AUA ACUGCGGAAA U-ACUGGAGC UAAUACAUGC AA-----CUA
#Eisenia_foetida
ACUUGG-AUA ACUGCGGUAA U-UCUGGAGC UAAUACAUGC CA----CAAA
#Eurypelma
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AU----CAGA
#Haemonchus_placei UUUUGG-AUA
ACUGCGGUAA U-UCUGGAGC UAAUACAUGC AA----AUAA
#Homo_sapiens
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC CG----ACGG
#Lanice
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AA----CAAA
#Lepidodermella
ACGUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AA-----CUA
#Limicolaria_kambeul ACUUGG-AUA ACUGUGGCAA
U-UCUAGAGC UAAUACAUGC UU---ACCAA
#Mnemiopsis_leidyi ACAUGG-AUA
ACCGUAGUAA U-UCUAGAGC UAAUACAUGC GA-----AAA
#Nematodirus_battus UUUUGG-AUA
ACUGCGGCAA U-UCUGGAGC UAAUACAUGC GU----UUAG
#Opisthorchis_viverrini ACAUGG-AUA ACUGUAUUAA U-UCUAGAGC
UAAUACAUGC CA----CUAU
#Pellioditis_typica UUUAGG-AUA
UCUUCGACAA A-U-UGAAGC UAAUACAUGC AA----CCAU
#Placopecten
ACUUGG-AUA ACUGUGGCAA U-UCUAGAGC UAAUACAUGC AA----AAAG
#Priapulus_caudatus ACUUGG-AUA
ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AA----UCAG
#Saccharomyces_cerevisiae ACAUGGUAUA ACCGUGGUAA U-UCUAGAGC UAAUACAUGC
UU-----AAA
#Saccoglossus_kowalevskii ACUUGG-AUA ACUGUGGCAA U-UCUAGAGC UAAUACAUGC
CU--ACCUCG
#Scypha_ciliata
ACUUGG-AUA ACCGUGGUAA U-UCUAGAGC UAAUACAUGC GU----UAAA
#S_purpuratus
ACAUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC UA----CCAA
#Tenebrio_molitor
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC AA---ACAGA
#Xenopus_laevis
ACUUGG-AUA ACUGUGGUAA U-UCUAGAGC UAAUACAUGC CG----ACGA
#Brachionus
-GCUCCG-AC C-----GUAU G------GGA --AGAGC-GC UUUUAUUAGA
#Philodina
-AUUCCG-GU A-----GCA- -------AUA UCGGAAU-GC UUUUAUUAGA
#N_pseudemydis
-AUGCUU-CG U-----CUU- -------ACG AAGAAGU-GC UUUUAUUAGA
#Centrorhynchus
-GUCCUG-AC U-----UC-- -------GGC -AGGGAC-GC AUUUAUCAGA
#Moniliformis
-GCUCCG-AC U-----UCU- -------GGA -AAGAGC-GC UUUUGUUAGA
#Acanthopleura
-GCUCCG-AC CUU---UUUG C----AGGGA --AGAGC-GC UUUUAUUAGA
#Anemonia
-GUCCCG-AC U-----UCU- -------GGA -AGGGAU-GU AUUUAUUAGA
#Anthopleura
-GUCCCG-AC U-----UCU- -------GGA -AGGGAU-GU AUUUAUUAGA
#Artemia
-GCCCCA-AC U----UCAC- -------GGA -AGGGGU-GC UUUUAUUAGA
#C_elegans
-UACCCC-AA C-----GCAA G-------G- -CGGGGU-GC AAUUAUUAGA
#Eisenia_foetida
-GCUCCG-AC CC---UUAUG -------GGA -AAGAGC-GC GUUUAUUAGG
#Eurypelma
-GCUCCG-AC CC----UCUG ------GGGA --CGAGC-GC UUUUAUUAGA
#Haemonchus_placei -ACCCUG-AC
-----UUUU- --------GA -AAGGGU-GC AAUUAUUAGA
#Homo_sapiens
-GCGCUG-AC CCCC-UUCGC --GGGGGGGA --UGCGU-GC AUUUAUCAGA
#Lanice
-GCCCCG-A? C?---C?CGU ------CGGG -AGGGGC-GC UUUUAUUAGA
#Lepidodermella
-GCCCUG-AC U-----UAC- -------GGA --GGGGC-GC UUUUAUUAGA
#Limicolaria_kambeul -GCUCCG-AC C----CUCGC
-------GGA -AAGAGC-GC UUUUAUUAGU
#Mnemiopsis_leidyi -GUCCCG-AC
U-----UCU- -------GGA -AGGGAU-GU AUUUAUUAGA
#Nematodirus_battus -GCCCUG-AC
-----UUUU- --------GA -AAGGGU-GC AAUUAUUAGA
#Opisthorchis_viverrini -GCCCUG-AC CC---GCAA- ------GGGA
-ACGGGU-GG AUUUAUUAGA
#Pellioditis_typica -GGCUCC--U
------UCG- --------G- --GGGUC-GC A-AUAUUAGA
#Placopecten
-GCACCG-AC U-----CAC- -------GGA --GGUGC-GA UUUUAUCAGU
#Priapulus_caudatus -GCUCCG-AC
C----UUACG -------GGA --CGAGC-GC UUUUAUUAGA
#Saccharomyces_cerevisiae -AUCUCG-AC C----CUUU- -------GGA -AGAGAU-GU
AUUUAUUAGA
#Saccoglossus_kowalevskii -GCGCUG-AC C---UCGCG- -------GGA --UGC-U-GC
UUUUAUUAGG
#Scypha_ciliata
-GUCCUG-AC C---UCUCGG -------GGA -AGGGAU-GU AUUUAUUAGA
#S_purpuratus
-GCGCCG-AC C----UCUU- -------GGA -AGGCGU-GC UUUUAUUAGG
#Tenebrio_molitor
-GCUCCA-AC CG---GAAA- ------CGGA -AGGAGC-GC UUUUAUUAGA
#Xenopus_laevis
-GCGCUG-AC CC----CCA- ------GGGA --UGCGU-GC AUUUAUCAGA
#Brachionus
CCA----AAA CC-AAUGGGG UC-------- ---------G CAA-------
#Philodina
UCA----AAA CC-UUCUAGU UCU------- ------UUAA CC--------
#N_pseudemydis
UCA----AAG CC-AAUGACU UC-------- -------CUU C---------
#Centrorhynchus
UCA----AAG CC-AACUUUU CC-------- -------GGU ----------
#Moniliformis
UCA-----AA CC-AAUGAUU UC-------- --------AU CC--------
#Acanthopleura
UCA----AGA UC-AAUCGGG C--------- --------CU CG--------
#Anemonia
UUCA---AAA CC-AAUGCGG GU-------- --------UC U---------
#Anthopleura
UUCA---AAA CC-AAUGCGG GU-------- --------UC C---------
#Artemia
UCA----AGA CC-AAUCGGG ---------- ------GCUU CGG-------
#C_elegans
ACA-----GA CC-AAACGUU ---------- --------UU CG--------
#Eisenia_foetida
UCA----AAA CC-AAUCGGG UC-------- --------CU CGC-------
#Eurypelma
CCA----AAA CC-AAUCGGA ---------- -------CUC GU--------
#Haemonchus_placei GCA-----AA
UC-AAUCACU ---------- --------UU CG--------
#Homo_sapiens
UCA----AAA CC-AACCCGG UCAGCCCCUC UCCGGC--CC CG--------
#Lanice
UCA----AAA CC-AGACGG? ?G-------- --------UU CGC-------
#Lepidodermella
UCA----AAA UC-AAUCGGC ---------- --------UU CG--------
#Limicolaria_kambeul UCA----AAA CC-AAUCGUC
GUUGCCC--- -------UUC AGC-------
#Mnemiopsis_leidyi UUAA---AAA
CC-AAUGCGU U--------- --------UA AC--------
#Nematodirus_battus GCA-----AA
UC-AAUCUCC ---------- --------UU CG--------
#Opisthorchis_viverrini ACA----GAA CC-AACCGGC GGUGAC----
--------UU CGGUU-----
#Pellioditis_typica AC------UA
CC-AGU---- ---------- ---------- ----------
#Placopecten
CCA----AAA CC-AAUCGGU C--------- --------GC AA--------
#Priapulus_caudatus CCA-----AA
CC-AAUCGGG U--------- --------UU CG--------
#Saccharomyces_cerevisiae UAAA---AAA UC-AAUGUC- ---------- --------UU
C---------
#Saccoglossus_kowalevskii ACCA---AGA CC-GACCCGG UGUCCUGCCU CCU-----UC
GC--------
#Scypha_ciliata
UCCA---AAA CC-GAUGCAG UC-------- --------GA AA--------
#S_purpuratus
AACAA--AGA CC-AAGC--- ---------- --------CU AG--------
#Tenebrio_molitor
UCA----AAA CC-AAUCGGU GGCGG----- ---------U CU--------
#Xenopus_laevis
CCA----AAA CC-AAUCCGG GGC------- ------CCCC GC--------
#Brachionus
---------- ---------- -------GAU CCC---UUU- -GUAU-GGU-
#Philodina
---------- ---------- -------GGA ACUG--UU-- -UGUU-GGU-
#N_pseudemydis
---------- ---------- -------GGG U?GUCAAACG -UUGU-GCU-
#Centrorhynchus
---------- ---------- -------GAA CAGCCGGU-- -UAAU-GAU-
#Moniliformis
---------- ---------- -------GAA AUCA--CU-- -UAAU-GCU-
#Acanthopleura
---------- ---------- --------GC CCGU--CC-- -UGUU-GGU-
#Anemonia
---------- ---------- --------GC CCGG---UG- -CUUU-GGU-
#Anthopleura
---------- ---------- --------GC CCGG---UG- -UGUU-GGU-
#Artemia
---------- ---------- ---------C UCG-----UC -UCUU-GGU-
#C_elegans
---------- ---------- ---------- GACG----UU -GUUU-GUU-
#Eisenia_foetida
---------- ---------- -------GGC CCGU--AA-- -CUCU-GAU-
#Eurypelma
---------- ---------- ---------U CCGU---AUC -CCAU-GGU-
#Haemonchus_placei ----------
---------- ---------G GUG----CA- -GUUU-GCU-
#Homo_sapiens
---------- ----GCCGGG GGGCGGGCGC CGG----CGG -CUUU-GGU-
#Lanice
---------- ---------- -------CUC UGGU--CGG- -CUUU-GGU-
#Lepidodermella
---------- ---------- ---------G CCG---UUU- -UUGU-GAU-
#Limicolaria_kambeul ---------- ----------
---GGGCGCG GCGU--CC-- -AACU-GGU-
#Mnemiopsis_leidyi ----------
---------- ---------G ACGC---UU- --UUC-GGU-
#Nematodirus_battus ----------
---------- ---------G GUG----CU- -GUUU-GCU-
#Opisthorchis_viverrini ---------- ---------- ---GCCGUCG
UUGCA-UUC- --UGU-GAU-
#Pellioditis_typica ----------
---------- ---------- UUA---CUG- -GAUA-GUU-
#Placopecten
---------- ---------- --------GG CCG---UCA- -CUCU-GGU-
#Priapulus_caudatus ----------
---------- --------GC CCG---UUC- -UUUU-GGU-
#Saccharomyces_cerevisiae ---------- ---------- ---------- -GGAC---U-
-CUUU-GAU-
#Saccoglossus_kowalevskii ---------- --------GG GUGGUGGGCC CGG----UCC
-UCCU-GGC-
#Scypha_ciliata
---------- ---------- ---------G GCUGG--UU- --AUU-GGU-
#S_purpuratus
---------- ---------- ---------C CCG--C-UUU -CGUU-GGU-
#Tenebrio_molitor
---------- ---------- ----CCGUCA UCG--U-ACA -ACUU-GGU-
#Xenopus_laevis
---------- ---------- ------GCCC CGG----CCG -CUUU-GGU-
#Brachionus
GA-CUCUGGA UAACUUUGU- G--CUGA-U- CGCA--UGGC --CUAGA-GC
#Philodina
GA-CUCUAAA UAACUUUGU- G--UUGA-U- CGUA--UGAC -CUUUGU-GU
#N_pseudemydis
GA-UUCUGAG UAAAGUAA-- G--CUGA-U- UGCA-UUGCC -GUUUAG-GC
#Centrorhynchus
GA-CUCUGGG UAAUUAUU-- ---UUGA-U- CGCA-UUGCU -ACGUGA-AC
#Moniliformis
GA-GUCUGAA UAAAUUUG-- ---CAGA-U- UGCA-GCGGU -CUUCGU-AC
#Acanthopleura
GA-UUCUGAA UAACUUUGU- G--CUGA-U- CGCA--UGGC --CACGC-GC
#Anemonia
GA-UUCAUAG UAACUGAU-- ---CGAA-U- CGCA--UGGC --CUUGC-GC
#Anthopleura
GA-UUCAUAG UAACUGUU-- ---CGAA-U- CGCA--GGGC --CUUGGCGC
#Artemia
GA-CUCUGAA UAACUAUAG- ---CCGA-U- CGCA--CGGU --CUCGC-AC
#C_elegans
GA-CUCUGAA UAAAGCAG-- ---UUUA-C- UGU---CAGU ---UUCG-AC
#Eisenia_foetida
GA-CUCUGGA UAACUUCGA- G--CUGA-U- CGCA--UGGC --CUCGU-GC
#Eurypelma
GA-CUCUGUA UAACUUUGG- G--CUGA-U- CGCA--CGGG --CUUGU-CC
#Haemonchus_placei GA-CUCUGAA
UAACGCAG-- ---CAUA-U- CGG---CGG- --CUUGU--U
#Homo_sapiens
GA-CUCUAGA UAACCUCGG- G--CCGA-U- CGCA--CGCC -CCCCGU-GG
#Lanice
GA-CUCUGAG UAACUUAUU- G--CGGA-U- CGCA--UGGC --CUCGU-GC
#Lepidodermella
GA-CUCUGGA UAACUUU-U- G--CCGA-C- CGCA--UGGC --CUUGG-CC
#Limicolaria_kambeul GA-CUCUGGA UAACUUUGU-
G--CUGA-U- CGCA--UGGC CUUCUGU-GC
#Mnemiopsis_leidyi GA-UUCAUAA
UAACUGUU-- ---?GAA-U- CGCA--UGGC -CCUCGU-GC
#Nematodirus_battus GA-CUCUGAA
UAAUGCAG-- ---CAUA-U- CGG---CGG- --CUUGA--C
#Opisthorchis_viverrini GA-CUCUGGA UAACUUUA-- ---CUGA-U-
CGCAGUCGGC --CUUGU-GU
#Pellioditis_typica GA-CUUUAAU
UAUCGUAGA- AA-UCGG-C- AGCG--UGAG --CUC-----
#Placopecten
GA-AUCUGGA UAACUUUGU- G--CUGA-U- CGCA--CGGC -CCUAGU-GC
#Priapulus_caudatus GA-CUCUGGA
UAACCUUGC- G--CUGA-U- CGCA--CGGU --CUCGC-AC
#Saccharomyces_cerevisiae GA-UUCAUAA UAACUUUU-- ---CGAA-U- CGCA--UGGC
--CUUGU-GC
#Saccoglossus_kowalevskii GAACUCUGGA UAACUUGG-- ---CGGA-U- CG-A--CGGC
-CUCUGC-G-
#Scypha_ciliata
GA-UUCAUGA UAACUGAA-- ---CGG?-U- CGCA--UGGU --CUUGC-GC
#S_purpuratus
GAACUCUGGA UAACUUAG-- ---CAGA-U- CGCA--CGGU -CAUCGC-AC
#Tenebrio_molitor
GA-CUCUGAA UAACUUUAC- G--CUGA-U- CGCA--CGGU --CUUGC-AC
#Xenopus_laevis
GA-CUCUAGA UAACCUCGG- G--CCGA-U- CGCA--CGUC --CCCGU-GA
#Brachionus
CGGCG-ACG- UAUCUUUC-- AAGUGUCUG- CCCUAUC-AA CUUUC-GAUG
#Philodina
CGACG-ACA- UAUCUUUC-- AAGUGUCUG- ACUUAUC-AA CUUUA-GACG
#N_pseudemydis
AGGCG-ACG- UGUCUUUC-- AAGUGUCUU- ACCUAUC-AA CUAUC-GUUG
#Centrorhynchus
AGGCG-ACG- GUGACUUC-- AAACGCCUG- ACCUAUC-AA CUUGU-GUUG
#Moniliformis
CGGCG-ACG- UAUCUUUC-- AAGUGUCUG- CCCUAUC-AA CUGGC-GAUG
#Acanthopleura
CGGCG-ACG- UAUCUUUC-- AAGUGUCUG- CCCUAUC-AA CUUUC-GAUG
#Anemonia
UGGCG-AUG- UUUCAUUC-- AAAUUUCUG- CCCUAUC-AA CUGUC-GAUG
#Anthopleura
UGGCGGAUG- UUUCAUUC-- AAAUUUCUG- CCCUAUC-AA CUGUC-GAUG
#Artemia
CGGCG-ACG- UGUCUUUC-- AAAUGUCUG- CCUUAUC-AA CUUUC-GAUG
#C_elegans
UGACU-CUA- UCCGGAAA-- GGGUGUCUG- CCCUUUC-AA CUA---GAUG
#Eisenia_foetida
CGGCG-ACG- UAUCUUUC-- AAGUGUGUG- CCCUAUC-AA CUUUC-GAUG
#Eurypelma
CGGCG-ACG- CAUCUUUC-- AAGUGUCUG- CCUUAUC-AA CUGUC-GAUG
#Haemonchus_placei CGCCG-AUA-
UUCCGAAA-- AAGUGUCUG- CCCUAUC-AA CCU---GAUG
#Homo_sapiens
CGGCG-ACG- ACCCAUUC-- GAACGUCUG- CCCUAUC-AA CUUUC-GAUG
#Lanice
CGGCG-ACG- UAUCUUUG-- AAGUGUCUG- CCCUAUC-AA CUAUC-GUAU
#Lepidodermella
UGGCG-GCG- UAUCUUUC-- AAAUGUCUG- CCCUAUC-AA CUUUC-GAUG
#Limicolaria_kambeul CGGCG-ACG- CAUCUUUC--
AAAUGUCUG- CCCUAUC-AA AUGUC-GAUG
#Mnemiopsis_leidyi CGGCG-AUG-
UUUCAUUC-- GAGUUUCUG- CCCUAUC-AA CUUUC-GAUG
#Nematodirus_battus CGCUG-AUA-
AUCCGAAA-- AAGUGUCUG- CCCUAUC-AA CCU---GAUG
#Opisthorchis_viverrini CGGCG-ACG- G-UCUUUC-- AAAUGUCUG-
CCCUAUC-AA UUUUC-GAUG
#Pellioditis_typica ---CG-AUG-
GGUGCAAG-- UUAUGUACG- CCCUAUC-AC CCA---GCAG
#Placopecten
CGGCG-ACG- UAUCUUUC-- AAAUGUCUG- ACCUAUC-AA CUUUC-GAUG
#Priapulus_caudatus CGGCG-ACG-
UAUCUUUC-- AAAUGUCUG- CCUUAUC-AA CUUUC-GAUG
#Saccharomyces_cerevisiae UGGCG-AUG- GUUCAUUC-- AAAUUUCUG- CCCUAUC-AA
CUUUC-GAUG
#Saccoglossus_kowalevskii -GGCG-ACG- -AACUUUC-- GAGUGUCUG- CCCUAUC-AA
CUUUC-GACG
#Scypha_ciliata
CGGCG-AUG- ACUCAUAC-- AAAUAUCUG- CCCUAUC-AA CUUUC-GAUG
#S_purpuratus
CGGCG-ACAG AAACCAUC-- AAACGUCUG- CCCUAUC-AA CUUUC-GAUG
#Tenebrio_molitor
CGGCG-ACG- CAUCUUUC-- AAAUGUCUG- CCUUAUC-AA CUGUC-GAUG
#Xenopus_laevis
CGGCG-ACG- AUACAUUC-- GGAUGUCUG- CCCUAUC-AA CUUUC-GAUG
#Brachionus
GUAAGCG--A UUUGCCUACC AUGGU-UGUA ACGGGUAACG GGGAAU-CAG
#Philodina
GUACAUU--A UAUGUCUACC GUGGU-UGUA ACGAGUA-CA GAGAAU-CAG
#N_pseudemydis
GUAGUUG--A UAUGACUACC AUGGU-AAUA ACGGGUAACG GGGAAU-CAG
#Centrorhynchus
GCAGUUG--A UGUUACUACC CCGGU-UGUU ACGGGUGACG GGAAAU-CGG
#Moniliformis
GUAGUUU--A UGUGCCUACC AUGGU-UGUA ACGGGUAACG GGGAAU-CAG
#Acanthopleura
GUACGUG--A UAUGCCUACC AUGGU-UGUA ACGGGUAACG GAGAAU-CAG
#Anemonia
GUAAGGU--G UUGGCUUACC AUGGU-UACA ACGGGUGACG GAGAAU-UAG
#Anthopleura
GUAAGGU--A UUGGCUUACC AUGGU-UACA ACGGGUGACG GAGAAU-UAG
#Artemia
GUAGGCU--A UGCGCCUACC AUGGU-UGCA ACGGGUAACG GGGAAU-CGG
#C_elegans
GUAGUUU--A UUGGACUACC AUGGU-UGUU ACGGGUAACG GAGAAU-AAG
#Eisenia_foetida
GUACGUG--A UAUGCCUACC AUGGU-AGUA ACGGGUAACG GGGAAU-CAG
#Eurypelma
GUAGGCUU-A UGCGCCUACC AUGGU-C-UA ACGGGUAACG GGGAAU-CAG
#Haemonchus_placei GUAGUCU--A
UUAGUCUACC AUGGU-UAUU ACGGGUAACG GAGAAU-AAG
#Homo_sapiens
GUAGUCG--C CGUGCCUACC AUGGU-GACC ACGGGUGACG GGGAAU-CAG
#Lanice
GUGAGCG--C CUUGCCCACA UAGGU-UAUA ACGGGUAACG GGG-AU-CAG
#Lepidodermella
GUAGGUG--A CAUGCCUACC AUGGU-UGUA ACGGGUAACG GAGAAU-CAG
#Limicolaria_kambeul GUACGUG--A CAUGCCUACC
AUGUU-UGUA ACGGGUAACG GGGAAU-CAG
#Mnemiopsis_leidyi GUAAGGU--A
UUGGCUUACC AUGGU-GACA ACGGGUAACG GAGAAU-UAG
#Nematodirus_battus GUAGUCU--A
UUAGUCUACC AUGGU-UAUU ACGGGUAACG GAGAAU-AAG
#Opisthorchis_viverrini GUAGGUG--A CCUGCCUACC AUGGU-GAUA
ACGGGUAACG GGGAAU-CAG
#Pellioditis_typica GCUGUUU--A
ACCGACAGCC AGGGG-UAUA ACGGGUAACG GAGAAC-UA-
#Placopecten
GUACGUG--C UAUGCCUACC AUGGU-UGUA ACGGGUAACG GAGAAU-CAG
#Priapulus_caudatus GUAGAUU--A
UGUGCCUACC AUGGU-CGUA ACGGGUAACG GGGAAU-CAG
#Saccharomyces_cerevisiae GUAGGAU--A GUGGCCUACC AUGGU-UUCA ACGGGUAACG
GGGAAU-AAG
#Saccoglossus_kowalevskii GUACGUU--A UGCGCCUACC GUGGU-GGCA ACGGGUAACG
GGGAAU-CAG
#Scypha_ciliata
GUAAGGU--A GUGGCUUACC AUGGU-UGCA ACGGGUAACG GAGAAU-UAG
#S_purpuratus
GUACGUU--A UGCGCCUACC AUGGU-CGUA ACGGGUAACG GAGAAU-CAG
#Tenebrio_molitor
GUAGGUU--C UGCGCCUACC AUGGU-UGUA ACGGGUAACG GGGAAU-CAG
#Xenopus_laevis
GUACUUU--C UGCGCCUACC AUGGU-GACC ACGGGUAACG GGGAAU-CAG
#Brachionus
GGUUC-GAUU CCGGAG-AGG GAGCAUGAGA AACGGCUACC ACAUCUACGG
#Philodina
GGUUU-GGUU CUGGAG-AGG CCGCCUGAGA AACGGCGACC ACUUCCAAGG
#N_pseudemydis
GGUUC-GAUU CCGGAG-AGA GAGCAUGAGA AACGGCUGUC ACAUCCAAGG
#Centrorhynchus
GGUUU-UAUU CCGGAG-AGA GGGCAUGAGA AAUGGCUGUC ACAUCCAAGG
#Moniliformis
GGUUC-GAUU CCGGAG-AGA GAGCAUGAGA AACGGCUAUC ACAUCCAAGG
#Acanthopleura
GGUUC-GAUU CCGGAG-AGG GAGCAUGAGA AACGGCUACC ACAUCCAAGG
#Anemonia
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#Anthopleura
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA GACGGCUACC ACAUCCAAGG
#Artemia
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#C_elegans
GGUUC-GACU CCGGAG-AGG GAGCCUUAGA AACGGCUACC ACGUCCAAGG
#Eisenia_foetida
GGUUC-GAUU CCGGAG-AGG GAGCAUGAGA AACGGCUACC ACAUCCAAGG
#Eurypelma
GGUUC-GAUU CCGGAG-AGG CAGCCUGAGA AACGGCUACC ACAUCCAAGG
#Haemonchus_placei GGUUC-GACU
CCGGAG-AGG GAGCCUUAGA AACGGCUACC ACAUCCAAGG
#Homo_sapiens
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#Lanice
GGUUC-GAUU CCGGAG-AGG GAGCAUGAGA AACGGCUACC ACAUCUAAGG
#Lepidodermella
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#Limicolaria_kambeul GGUUC-GAUU CCGGAG-AGG
GAGCAUGAGA AACGGCUACC ACAUCCAAGG
#Mnemiopsis_leidyi GGUUC-GAUU
CCGGAG-AGG GAGCCCGAGA AACGGCUACC ACAUCCAAGG
#Nematodirus_battus GGUUC-GACU
CCGGAG-AGG GAGCCUUAGA AACGGCUACC ACAUCCAAGG
#Opisthorchis_viverrini GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA
AACGGCUACC ACUUCCAAGG
#Pellioditis_typica GGUUC-GUCU
CCGGAG-AAG AAGCCUUCGA AA-GGCUACU ACAUCCAAGG
#Placopecten
GGUUC-GGUU CCGGAG-AGG GAGCAUGAGA AACGGCUACC ACAUCCAAGG
#Priapulus_caudatus GGUUC-GAUU
CCGGAG-AGG GAGCAUGAGA AACGGCUACC ACAUCCAAGG
#Saccharomyces_cerevisiae GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC
ACAUCCAAGG
#Saccoglossus_kowalevskii GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC
ACAUCCAAGG
#Scypha_ciliata
?GUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#S_purpuratus
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AAUGGCUACC ACAUCCAAGG
#Tenebrio_molitor
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#Xenopus_laevis
GGUUC-GAUU CCGGAG-AGG GAGCCUGAGA AACGGCUACC ACAUCCAAGG
#Brachionus
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-UAGAA- ---CGGGGAG
#Philodina
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCU-CAAAA- ---CGAGGAG
#N_pseudemydis
-AAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-UAGAU- ---CGGGGAG
#Centrorhynchus
-AUGGC-AGC AGGCGCGCAA AUUACCC-AA UUC-CCGAA- ---CGGAGAG
#Moniliformis
-AAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-UAGAU- ---CGGGGAG
#Acanthopleura
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-UGGCA- ---CGGGGAG
#Anemonia
-AAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-UGACU- ---CAGGGAG
#Anthopleura
-AAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-UGACU- ---CAGGGAG
#Artemia
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-CAGCA- ---CGGGGAG
#C_elegans
-AAGGC-AGC AGGCGCGAAA CUUAUCC-AC UGU-UGA--- ---GUAUGAG
#Eisenia_foetida
UAAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-CGACA- ---CGGGGAG
#Eurypelma
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-CGGCA- ---CGGGGAG
#Haemonchus_placei -AAGGC-AGC
AGGCGCGAAA CUUAUCC-AA UCU-UGAAC- ---AGAUGAG
#Homo_sapiens
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-CGACC- ---CGGGGAG
#Lanice
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-UGGCA- ---CGGGGAG
#Lepidodermella
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-CGACA- ---CGGGGAG
#Limicolaria_kambeul -AAGGC-AGC AGGC--ACAA
CUUACCC-A- CUC-CGGCA- ---CGGAGGG
#Mnemiopsis_leidyi -AAGGC-AGC
AGGCGCGCAA AUUACCC-AA UCC-CGAUU- ---CGGGGAG
#Nematodirus_battus -AAGGC-AGC
AGGCGCGAAA CUUAUCC-AA UCU-UGAAU- ---AGAUGAG
#Opisthorchis_viverrini -AAGGC-AGC AGGCGCGCAA AUUACCC-AA
UCC-CGGCA- ---CGGGGAG
#Pellioditis_typica -AAGGC-AGC
AGGCGCGUAA CUUAUCC-AC UAC----AU- ---CAGUGAG
#Placopecten
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-UGGCA- ---CGGGGAG
#Priapulus_caudatus -AAGGC-AGC
AGGCACGCAA AUUACCC-AU UCC-CGGCA- ---CGGAGAG
#Saccharomyces_cerevisiae -AAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-UAAUU-
---CAGGGAG
#Saccoglossus_kowalevskii -AAGGC-AGC AGGCGCGCAA AUUACCC-AU UCC-CGACA-
---CGGGA-G
#Scypha_ciliata
-AAGGC-AGC AGGCGCGCAA AUUACCC-AA UCC-CGACA- ---CGGGGAG
#S_purpuratus
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCU-CGACA- ---CGGGGAG
#Tenebrio_molitor
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-CGGCA- ---CGGGGAG
#Xenopus_laevis
-AAGGC-AGC AGGCGCGCAA AUUACCC-AC UCC-CGACG- ---CGGGGAG
#Brachionus
GUAGUGACGA AAAAU-AACA AUACC-GGA- CUC---AAU- GAGGCUCGGU
#Philodina
GUAGUGAAGA GAAAU-AACG AUG---UUA- GUC--UAAUA UAGGCU-GAU
#N_pseudemydis
GUAGUGACGA AAAAU-AACG AUGCC-GUA- AUC---UUCG GAU--UCGGC
#Centrorhynchus
GUAGUGACGA GAAAU-AGCG AGGUC-GUG- GCC---UUUU GGC--CCGAC
#Moniliformis
GUAGUGACGA AAAAU-AACA AUGCC-GCA- GUC--GAAUA GAC--UCGGC
#Acanthopleura
GUAGUGACGA AAAAU-AACA AUACG-GGAU CUC---UUC- GAGGCCCCGU
#Anemonia
GUAGUGACAA GAACU-AACA AUACA-GGG- CUU--UUGU- AAG-UCUUGU
#Anthopleura
GUAGUGACAA GAAAU-AACA AUACA-GGG- CUU--UUCU- AAG-UCUUGU
#Artemia
GUAGUGACGA AAAAU-AACG AUGCA-GGA- CUC--AUCC- GAGGCCCUGU
#C_elegans
AUAGUGACUA AAAAU-AUAA AGACU-C-A- UCC--UUUU- GGA-U-GAGU
#Eisenia_foetida
GUAGUGACGA AAAAU-AACA AUACG-GGA- CUC--UUUU- GAGGCCCCGU
#Eurypelma
GUAGUGACGA AAAAU-AACA AUACG-GGA- CUC--UUUU- GAGACCCCGU
#Haemonchus_placei AUAGUGACUA
AAAAU-AAAA AGACC-AU-- UCC---UAU- GGA--ACGGU
#Homo_sapiens
GUAGUGACGA AAAAU-AACA AUACA-GGA- CUC--UUUC- GAGGCCCUGU
#Lanice
GUAGUGACAA GAAAU-AACA AUACG-GGA- CUC--UAUC- GAGGCCCCGU
#Lepidodermella
GUAGUGACGA AAAAU-AACA AUGCU-GGG- CU---UCA-- -AG-UCCGGU
#Limicolaria_kambeul GUAGUGACGA AAAAU-AACA
AUACG-GGA- CUC--UUUC- GAGGCCCCGU
#Mnemiopsis_leidyi GUAGUGACAA
UAAAU-AACG UUGCA-GGC- GCC--AAC-- GGC-UUCUGC
#Nematodirus_battus AUAGUGACUA
AAAAU-AAAA AGACC---A- UUC--CUAU- GGA--ACGGU
#Opisthorchis_viverrini GUAGUGACGA AAAAU-ACGG AUACG-GGA-
CUC--AUUA- GAGGCUCCGU
#Pellioditis_typica AUAGUAACUA
GUCUU-AACU AUUAA-CUG- ACU--UUUC- AAG--UUAGU
#Placopecten
GUAGUGACGA AAAAU-AACA AUACG-GGA- CUC--UUUC- GAGGCCCCGU
#Priapulus_caudatus GUAGUGACGA
UAAAU-AACA AUACG-GGA- CUC--UUUC- GAGGACCCGU
#Saccharomyces_cerevisiae GUAGUGACAA UAAAU-AACG AUACA-GGG- CCC--AUUC-
GGG-UCUUGU
#Saccoglossus_kowalevskii GUAGUGACGA AAAAU-AACG AUACG-GGA- CUC--UUUG-
GAGG-CCCGU
#Scypha_ciliata
GUAGUGACGA UAAAU-AACA AUGCA-GGA- CUC--UAAC- GAG-UCUUGC
#S_purpuratus
GUAGUGACGA AAAAU-AACA AUACA-GGA- CUC--UUUC- GAGGCCCUGU
#Tenebrio_molitor
GUAGUGACGA AAAAU-AACG AUACG-GGA- CUC--AUCC- GAGGCCCCGU
#Xenopus_laevis
GUAGUGACGA AAAAU-AACA AUACA-GGA- CUC--UUUC- GAGGCCCUGU
#Brachionus
AAUUGA--AA UGAGUACAGU UUAAAAC-CC UUAACGAGGA UCUAUUGGAG
#Philodina
AAUCGG--AA UGGAAACACU GUAAAAA-GG UUAUUGAUUA ACAAUUGGAG
#N_pseudemydis
AAUUGG--AA UGAGAACAAU CAAAAUC-CU UUAUCGAGGA UCAAUUGGAG
#Centrorhynchus
AAUUGA--AA UGAGAACACU GGAACAA-UG UUAUCGAGAA UCUAUUGGAG
#Moniliformis
AAUUGG--AA UGAGUACAAU CUAAAUC-CU UUAACGAGGA ACAAUUGGAG
#Acanthopleura
AAUUGG--AA UGAGUACACU UUAAAUC-CU UUAACGAGGA UCUAUUGGAG
#Anemonia
AAUUGG--AA UGAGUACAAC UUAAAUC-CU UUAACGAGGA UCCAUUGGAG
#Anthopleura
AAUUGG--AA UGAGUACAAC UUAAAUC-CU UUAACGAGGA UCCAUUGGAG
#Artemia
GAUUGG--AA UGAGUACACU UUAAAUC-CU UUAACGAGGA UCCAUUGGAG
#C_elegans
UAUUUC--AA UGAGUUGAAU ACAAAUG-AU UCUUCGAGUA GCAAGGAGAG
#Eisenia_foetida
AAUUGG--AA UGAGUACACU UUAAAUC-CU UUAACGAGGA UCAAUUGGAG
#Eurypelma
AAUUGG--AA UGAGUACACU CUAAAUC-CU UUAAC-AGGA UCUAUUGGAG
#Haemonchus_placei CAUUUC--AA
UGAGUUGAUC AUAAACC-UU UUUUCGAGGA UCAAGUGGAG
#Homo_sapiens
AAUUGG--AA UGAGUCCACU UUAAAUC-CU UUAACGAGGA UCCAUUGGAG
#Lanice
AAUUGG--AA UGAGCACAGU UUAAAUC-CU UUAACGAGGA UCUAUUGGAG
#Lepidodermella
AAUUGG--AA UGAGUACACU UUAAAUC-CU UUAACGAGGA UCUAGUGGAG
#Limicolaria_kambeul AAUUGG--AA UGAGUACACU
UUAAACC-CU UUAACGAGGA UCUAUUGGAG
#Mnemiopsis_leidyi AGUCGG--AA
UGAGUACAAU AUAACAC-CC UUAACGAGGA ACAAUUGGAG
#Nematodirus_battus CAUUUC--AA
UGAGUUGAGC UUAAACC-UU UUUUCGAGGA UCAAGUGGAG
#Opisthorchis_viverrini AAUUCG--AA UGAGUACAAU UUAAAUC-CU
UUAACGAGGA UCAACUGGAG
#Pellioditis_typica UAUGGUC-CA
UGAGUUGAGC UUAAAUA-GC UCUUCGAGGA UCAAGUGGAG
#Placopecten
AAUUGG--AA UGAGUACACU UUAAACC-CU UUAACGAGUA UCCAUUGGAG
#Priapulus_caudatus AAUUGG--AA
UGAGUACACU UUAAAUC-CU UUAACGAGGA UCUAUUGGAG
#Saccharomyces_cerevisiae AAUUGG--AA UGAGUACAAU GUAAAUA-CC UUAACGAGGA
ACAAUUGGAG
#Saccoglossus_kowalevskii AAUCGG--AA UGAGCACAGU CCAAAUC-CU UUAGCGAGGA
UCCAUUGGAG
#Scypha_ciliata
AAUUGG--AA UGAGAACAAU UUAAACC-CC UUAACGAGGA ACAAUUGGAG
#S_purpuratus
AAUUGG--AA UGAGUACACU UUAAAUC-CU UUAACGAGGA UCUACUGGAG
#Tenebrio_molitor
AAUCGG--AA UGAGUACACU CUAAACC-CU UUAACGAGGA UCAAUUGGAG
#Xenopus_laevis
AAUUGG--AA UGAGUACACU UUAAAUC-CU UUAACGAGGA UCUAUUGGAG
#Brachionus
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Philodina
GGCAAG-UCU GGU--GCCAG C--AGCCGCG --UAAUUCCA GCUCCAAUAA
#N_pseudemydis
GGCAAGUUCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCGAAUAG
#Centrorhynchus
GGCAAGUUCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCGAAGAG
#Moniliformis
GGCAAGUUCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCGAAUAG
#Acanthopleura
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Anemonia
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Anthopleura
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Artemia
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAACUCCA GCUCCAAUAG
#C_elegans
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCUCCUAG
#Eisenia_foetida
GGCAAG-UCU GGU--GCCAG C--AGCCGCG --UAAUUCCA GCUCCAAUAG
#Eurypelma
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Haemonchus_placei GGCAAG-UCU
GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCACUAG
#Homo_sapiens
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Lanice
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Lepidodermella
GGCAAG-UCU GGU?GACCAG C--AGCCCGC GGUAAUUCCA GCUCCACGAG
#Limicolaria_kambeul GGCAAG-UCU GGU--GCCAG
C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Mnemiopsis_leidyi GGCAAG-UCU
GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Nematodirus_battus GGCAAG-UCU
GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCACUAG
#Opisthorchis_viverrini GGCAAG-UCU GGU--GCCAG C--AGCCGCG
G-UAACUCCA GCUCCAGAAG
#Pellioditis_typica GGCAAG-UCU
GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCACUAG
#Placopecten
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Priapulus_caudatus GGCAAG-UCU
GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUUCAAUAG
#Saccharomyces_cerevisiae GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA
GCUCCAAUAG
#Saccoglossus_kowalevskii GGCAAG-UCU GGU--GCCAG C-UUGCCGCG --UAAUUCCA
GCUCCAAUAG
#Scypha_ciliata
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#S_purpuratus
GGCAAG-UCU GGU--GCCAG C--AGCCGCG --UAAUUCCA GCUCCAGUAG
#Tenebrio_molitor
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Xenopus_laevis
GGCAAG-UCU GGU--GCCAG C--AGCCGCG G-UAAUUCCA GCUCCAAUAG
#Brachionus
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUCUC-GGGU
#Philodina
GGAAAACUAA AGUUGCUGUG UUUAAAAAGC UCGUAGUUGA AUUUC-GGGU
#N_pseudemydis
CGUAUGUUAA AUUUGCUGCG GUUAAAAAGC UCGUAGUUGG GUAUC-AGGA
#Centrorhynchus
CGUAUGUCAA AGUUGCUGUG GUUAAAACGC UCGUCGUUGG ACAUC-AGGA
#Moniliformis
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUAUC-AGGA
#Acanthopleura
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUCUC-GGGU
#Anemonia
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG ACUUC-GGGG
#Anthopleura
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG ACUUC-GGGG
#Artemia
CGUAUAUUAA AGUUGCUGCG GUUAAAAAGC UCGUAGUUGG AUAUG-GGUC
#C_elegans
UGUAUCUCGU UAUUGCUGCG GUUAAAAAGC UCGUAGUUGG AUCUA-GGUU
#Eisenia_foetida
CGUAUACUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUCUC-GGGU
#Eurypelma
CGUAUAUUAA AGUUGUUGCG GUUAAAAAGC UCGUAGUUGG AUCUC-AGUU
#Haemonchus_placei UGUAAAUCGU
CAUUGCUGCG GUUAAAAAGC UCGUAGUUGG AUCUG-AGUU
#Homo_sapiens
CGUAUAUUAA AGUUGCUGCA GUUAAAAAGC UCGUAGUUGG AUCUU-GGGA
#Lanice
CGUAUAUUAA UGUUGCUGCA GUUAAAAAGC UCGUAGUUGG AUCUC-GGGU
#Lepidodermella
CAUGUACGUA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUCUC-AGGC
#Limicolaria_kambeul CGUAUAUUAA AGUUGUUGCA
GUUAAAAAGC UCGUAGUUGG AUCUC-AGGC
#Mnemiopsis_leidyi CGUAUAUUAA
AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUUUC-GGAA
#Nematodirus_battus UGUAAAUCGU
CAUUGCUGCG GUUAAAAAGC UCGUAGUUGG AUCUG-AGUC
#Opisthorchis_viverrini CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC
UCGUAGUUGG AUCUG-GGUC
#Pellioditis_typica CGUAAAUUAU
UACUGCUGCG GUUAAAAAGC UCGUAGUUGA AUCU--AGAC
#Placopecten
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUCUC-AGGU
#Priapulus_caudatus CGUAUAU-AA
AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUCUG-GGGC
#Saccharomyces_cerevisiae CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGA
ACUUU-GGGC
#Saccoglossus_kowalevskii CGUAUAUUAA AGCUGCUGCA GUUAAAAAGC UCGUAGUUGG
AUCUU-GGUC
#Scypha_ciliata
CGUAUAUUAA AGUUGUUGCA GUUAAAAAGC UCGUAGUUGG AUUUC-GGAG
#S_purpuratus
CGUAUAUUAA UGCUGCUGCA GUUAAAAAGC UCGUAGUCGU AUCUA-GGGC
#Tenebrio_molitor
CGUAUAUUAA AGUUGUUGCG GUUAAAAAGC UCGUAGUCGA AUCUG-UGUC
#Xenopus_laevis
CGUAUAUUAA AGUUGCUGCA GUUAAAAAGC UCGUAGUUGG AUCUU-GGGA
#Brachionus
A-CUAGC--A UGU-GGUACG -C-------- ---------- ----------
#Philodina
A-UUUGU--U GCU---AGCU -GGU------ ---------- ----------
#N_pseudemydis
G-AUGAA--C UCU-GCG-CU -GUC------ ---------- ----------
#Centrorhynchus
G-GCGGG--U CGU-AGA-CG -ACC------ ---------- ----------
#Moniliformis
G-AUGAU--U GAC-GG-ACU -UC------- ---------- ----------
#Acanthopleura
U-CAGGC--U GGA-GGUCCG -CC------- ---------- ----------
#Anemonia
U-GGCAC--G GCC-GGUCCG -CC------- ---------- ----------
#Anthopleura
U-GGG----C GCC-GGUCCG -CC------- ---------- ----------
#Artemia
--UCGGUC-G GGU-GGUGCC -G-------- ---------- ----------
#C_elegans
A-CGUG---C CGC-AGUUCG -C-------- ---------- ----------
#Eisenia_foetida
--CGUGCC-G AGC-GGUUCG -C-------- ---------- ----------
#Eurypelma
--CCAGAC-G GGC-GGUCCG -CC------- ---------- ----------
#Haemonchus_placei A-CAUG---C
AGU-GAUUCG -C-------- ---------- ----------
#Homo_sapiens
--GCGGGC-G GGC-GGUCCG -CC------- ---------- ----------
#Lanice
C-CAGGC--C UGC-GGUUCC -G-------- ---------- ----------
#Lepidodermella
U-UGUGG--C CGU-GGUCCG -CU------- ---------- ---------C
#Limicolaria_kambeul G-CAGGC--G GGC-GGUCCG
-GC------- ---------- ----------
#Mnemiopsis_leidyi C-CGGCC--G
AUU-GGUCCG -UC------- ---------- ----------
#Nematodirus_battus A-CAU-G--C
AGU-GGUUCG -C-------- ---------- ----------
#Opisthorchis_viverrini G-CAUGG--C UAC-AUGCCG -UUGCUCGUA
UUCCUGGC-- ----------
#Pellioditis_typica G-UGUAU--U
GUU-GGCAUG -CU------- ---------- ---------U
#Placopecten
C-CAGGC--U UGC-GGUCCA -CU------- ---------- ----------
#Priapulus_caudatus U-UAGGC--U
GGU-GGUCCA -U-------- ---------- ----------
#Saccharomyces_cerevisiae --CCGGUUG- GCC-GGUCCG -A-------- ----------
----------
#Saccoglossus_kowalevskii C-GCGGGCG- GGC-GGUUCU -C-------- ----------
----------
#Scypha_ciliata
C-GGAGC--U CAC-GGUCCG -CCU------ ---------- ----------
#S_purpuratus
--UUGGGC-U GAG-GGUCCG -UC------- ---------- ----------
#Tenebrio_molitor
--CCGCGC-C GCC-GGUUCA -UCG------ ---------- ----------
#Xenopus_laevis
--UCGAGCU- GGC-GGUCCG -CC------- ---------- ----------
#Brachionus
-UUUUUU--- ---------- ---------- ---------- -GCU--GU--
#Philodina
---CGU---- ---------- ---------- ---------- ACUGACAU-G
#N_pseudemydis
-UAUUAU--- ---------- ---------- ---------- GUACAGCA--
#Centrorhynchus
-AAGU----- ---------- ---------- ---------- GUUGUUAC--
#Moniliformis
--UCAAU--- ---------- ---------- ---------- GGAG--CA--
#Acanthopleura
--UCGC---- ---------- ---------- ---------- GGCG--GC--
#Anemonia
--GCAA---- ---------- ---------- ---------- -GUGU-GU--
#Anthopleura
--GCAA---- ---------- ---------- ---------- -GUGU-GU--
#Artemia
--CCUCA--- ---------- ---------- ---------- -CGG--UG--
#C_elegans
--AAUUU--- ---------- ---------- ---------- -GCG--UC--
#Eisenia_foetida
--UUC----- ---------- ---------- ---------- -GCG-GCGG-
#Eurypelma
--UAAC---- ---------- ---------- ---------- GGUGG-UU--
#Haemonchus_placei -CUUUG----
---------- ---------- ---------- -GCG--UU--
#Homo_sapiens
--GCGA---- ---------- ---------- ---------- GGCGA-GC--
#Lanice
--CCCGU--- ---------- ---------- ---------- -GCG--GA--
#Lepidodermella
GAUACG---- ---------- ---------- ---------- GGUG--UG--
#Limicolaria_kambeul --UCGC---- ----------
---------- ---------- GCCG--UU--
#Mnemiopsis_leidyi --CUCU----
---------- ---------- ---------- GGAU--CG--
#Nematodirus_battus -CUUUG----
---------- ---------- ---------- -GCG--UU--
#Opisthorchis_viverrini ---CUG---- ---------- -----GUUCA
CACCGGGA-C GGGU--UU--
#Pellioditis_typica UUGGC-----
---------- ---------- ---------- ----------
#Placopecten
--CCUU---- ---------- ---------- ---------- GGUG--GC--
#Priapulus_caudatus CUAGCG----
---------- ---------- ---------- -AUG--GU--
#Saccharomyces_cerevisiae -UUUUU---- ---------- ---------- ----------
-UCG--UG--
#Saccoglossus_kowalevskii -CGUACGAGU ---------- ---------- ----------
-GGGU-CU-U
#Scypha_ciliata
--UUUC---- ---------- ---------- ---------G GGUG--UG--
#S_purpuratus
--GUAAGG-- ---------- ---------- ---------- GGUG--C---
#Tenebrio_molitor
--UUCG---- ---------- ---------- ---------C GGUG--UUA-
#Xenopus_laevis
--GCGA---- ---------- ---------- ---------- GGCG--GC--
#Brachionus
UACUAC-AUG U----CUGG- --UCCUAA-- --------UC AACCGGU---
#Philodina
UUGGUU-AA- -----CAGA- --UCCUCAC- ---------- UUGCUGGA--
#N_pseudemydis
UUGCGU-GA- ---GCUUCG- -CUCCUUA-- ---------U GUUUAACC--
#Centrorhynchus
UGCGU----- ---GCCU-G- -CUCCUAAGA U--------U AUGCUU----
#Moniliformis
ACCGUG-U-- ----UUUCG- -CUCCUCUUU --------GU ACCGUUUC--
#Acanthopleura
UACUUC-CCG ---CUCCU-- GACCUACC-- ---------A UCGGGUU---
#Anemonia
CACUGG-CCG ----GGCCG- -CUCUUCU-- ---------- -UCGCAAAG-
#Anthopleura
CACUGG-CCG -----GGCC- GCUCUUC--- ---------- CUCGCAAAG-
#Artemia
-GUCAC--UG CC-UCGAUC- GGACA----- --------AU UCAUUGGAU-
#C_elegans
AACUGU--GG U----C--G- UGACUUCUAA ---------U UUGCUGGU--
#Eisenia_foetida
UACUUC-UCG G---C?C-G- -GCCUAGC-- ---------C GCCGGUCU--
#Eurypelma
-ACUGC-CUG GC---CUG-- -AACA----- -------GCC CAGCCGGUU-
#Haemonchus_placei AAUCGC-UGU
U-------G- UAACUA---- ---------U UUGCUGGU--
#Homo_sapiens
CACCGC--CC GU-CCCCGC- CCCUUGCC-- ---------- -UCUCGGCG-
#Lanice
UACUGC-UCG U---CC--G- -ACCUA---- ---------C CAGCCGGCCG
#Lepidodermella
CACUGC--CG U---GCCCG- GUCU------ ---------A CGUCUGGU--
#Limicolaria_kambeul CACUGC-CCG ----UUGU--
CCUCCUGCCC UACCGU--CU GCCGGCUCU-
#Mnemiopsis_leidyi UGUACU-GA-
--UCGGUCU- GUUCUUC--- ---------- UUCGCGAAG-
#Nematodirus_battus AAUCGC-UGU
U-------G- UGACUA---- ---------U UUGCUGGU--
#Opisthorchis_viverrini GUGAGU-CGG ----UGUCG- UGGUUGUGCA
GCCUU---UC UGCCGUGU--
#Pellioditis_typica -AUUCAUUUG
U---CAUUG- GCUUUAGCCU ---------U CAACCGUC--
#Placopecten
UACUGC-UCG ----UCCU-- GACCUAC--- --------CU CCCGGUU---
#Priapulus_caudatus UACUGGCCUG
U---CCUGG- -CCUUUA--- ---------C CUCCCGGU--
#Saccharomyces_cerevisiae UACUGGAUUU C--CAACGG- GGCCUUUCC- ----------
-UUCUGGCU-
#Saccoglossus_kowalevskii CGCUGC--CC GU--CCCG-- GACUCUC--- ----------
-CUCCGGUC-
#Scypha_ciliata
CACUGU-GC- ---UGUUCU- GUUCUUC--- ---------- UUCUCGUGG-
#S_purpuratus
-ACUCU---- GAGUACCA-- GCCUCCC--- ---------- -UCGCGGCUU
#Tenebrio_molitor
-ACUGG-CGU GC---CGCG- GGACG----- --------UC CUGCCGGUGG
#Xenopus_laevis
UACCGC--CU GU-CCCAG-- CCCCUGCC-- ---------- -UCUCGGCG-
#Brachionus
---------- ---------- ---------- ---------- ----------
#Philodina
---------- ---------- ---------- ---------- ----------
#N_pseudemydis
---------- ---------- ---------- ---------- ----------
#Centrorhynchus
---------- ---------- ---------- ---------- ----------
#Moniliformis
---------- ---------- ---------- ---------- ----------
#Acanthopleura
---------- ---------- ---------- ---------- ----------
#Anemonia
---------- ---------- ---------- ---------- ----------
#Anthopleura
---------- ---------- ---------- ---------- ----------
#Artemia
---------- ---------- ---------- ---------- ----------
#C_elegans
---------- ---------- ---------- ---------- ----------
#Eisenia_foetida
---------- ---------- ---------- ---------- ----------
#Eurypelma
---------- ---------- ---------- ---------- ----------
#Haemonchus_placei ----------
---------- ---------- ---------- ----------
#Homo_sapiens
---------- ---------- ---------- ---------- ----------
#Lanice
A--------- ---------- ---------- ---------- ----------
#Lepidodermella
---------- ---------- ---------- ---------- ----------
#Limicolaria_kambeul ---------- ----------
---------- ---------- ----------
#Mnemiopsis_leidyi ----------
---------- ---------- ---------- ----------
#Nematodirus_battus ----------
---------- ---------- ---------- ----------
#Opisthorchis_viverrini ---CUGU--- UUCGACAGGU GUUAGCAUGA
UUGGUGGG-U UCGU-CCCUG
#Pellioditis_typica ----------
---------- ---------- ---------- ----------
#Placopecten
---------- ---------- ---------- ---------- ----------
#Priapulus_caudatus ----------
---------- ---------- ---------- ----------
#Saccharomyces_cerevisiae ---------- ---------- ---------- ----------
----------
#Saccoglossus_kowalevskii ---------- ---------- ---------- ----------
----------
#Scypha_ciliata
---------- ---------- ---------- ---------- ----------
#S_purpuratus
G--------- ---------- ---------- ---------- ----------
#Tenebrio_molitor
GCUUAGCUC- -GUGA--GGG CGGCC----- ---------- ----------
#Xenopus_laevis
---------- ---------- ---------- ---------- ----------
#Brachionus
---------- ---------- ---------- ---------- ----------
#Philodina
---------- ---------- ---------- ---------- ----------
#N_pseudemydis
---------- ---------- ---------- ---------- ----------
#Centrorhynchus
---------- ---------- ---------- ---------- ----------
#Moniliformis
---------- ---------- ---------- ---------- ----------
#Acanthopleura
---------- ---------- ---------- ---------- ----------
#Anemonia
---------- ---------- ---------- ---------- ----------
#Anthopleura
---------- ---------- ---------- ---------- ----------
#Artemia
---------- ---------- ---------- ---------- ----------
#C_elegans
---------- ---------- ---------- ---------- ----------
#Eisenia_foetida
---------- ---------- ---------- ---------- ----------
#Eurypelma
---------- ---------- ---------- ---------- ----------
#Haemonchus_placei ----------
---------- ---------- ---------- ----------
#Homo_sapiens
---------- ---------- ---------- ---------- ----------
#Lanice
---------- ---------- ---------- ---------- ----------
#Lepidodermella
---------- ---------- ---------- ---------- ----------
#Limicolaria_kambeul ---------- ----------
---------- ---------- ----------
#Mnemiopsis_leidyi ----------
---------- ---------- ---------- ----------
#Nematodirus_battus ----------
---------- ---------- ---------- ----------
#Opisthorchis_viverrini CCUGAUCUGU UGACAU---- ----------
---------- ----------
#Pellioditis_typica ----------
-----U---- ---------- ---------- ----------
#Placopecten
---------- ---------- ---------- ---------- ----------
#Priapulus_caudatus ----------
---------- ---------- ---------- ----------
#Saccharomyces_cerevisiae ---------- ---------- ---------- ----------
----------
#Saccoglossus_kowalevskii ---------- ---------- ---------- ----------
----------
#Scypha_ciliata
---------- ---------- ---------- ---------- ----------
#S_purpuratus
---------- ---------- ---------- ---------- ----------
#Tenebrio_molitor
---------- ---------- ---------- ---------- ----------
#Xenopus_laevis
---------- ---------- ---------- ---------- ----------
#Brachionus
---------- ---------- --------UG GCC-GU--UG AUGUCC--UU
#Philodina
---------- ---------- --------CG GCU-GG--CG AUGAUC--UU
#N_pseudemydis
---------- ---------- ---------- AUU-CC--UG A-GCCC--GA
#Centrorhynchus
---------- ---------- -------GUC UCU-UG--AG AUGCGC--UU
#Moniliformis
---------- ---------- ---------- AUC-GU--UG AUGCAC--UU
#Acanthopleura
---------- ---------- ---------U UCC-CU--UG GUGCUC--UU
#Anemonia
---------- ---------- ---------- ACC-GC--GU GUGCUC--UU
#Anthopleura
---------- ---------- ---------- ACU-GC--GU GUGCUC--UU
#Artemia
---------- ---------- ---------C GUU-CG--GG GUGCUC--UU
#C_elegans
---------- ---------- ---------- -UU-GA---G GUUGGG--UU
#Eisenia_foetida
---------- ---------- ---------- UCG-CU--UG GUGCUC--UU
#Eurypelma
---------- ---------- ---------- UCC-CU--AG AUGAUC--UU
#Haemonchus_placei ----------
---------- ---------- UUU-CU--AU UGAGGU--UU
#Homo_sapiens
---------- ---------- ---------C CCC-CU--CG AUGCUC--UU
#Lanice
---------- ---------- ---------- -CC-CU--UG GUGCCC--UU
#Lepidodermella
---------- ---------- ------UUAC AAC-CU-AUA GUGCUC--UU
#Limicolaria_kambeul ---------- ----------
--------CU CCC-GC--GG GUGCUC--UU
#Mnemiopsis_leidyi ----------
---------- ---------- ACC-GC--GU GUGCCC--UU
#Nematodirus_battus ----------
---------- ---------- UUU-CU--AU UGAGGU--UU
#Opisthorchis_viverrini ---------- ---------- --------GC
UUC-CC--AG GUGCCU--UA
#Pellioditis_typica ----------
---------- -----UUGCU GGU-UU--UC -UGUUG--GU
#Placopecten
---------- ---------- --------UU ACC-CU--UG GUGCUC--UU
#Priapulus_caudatus ----------
---------- --------CU AUC-UU--UG UUGCUC--UU
#Saccharomyces_cerevisiae ---------- ---------- ---------- -AA-CC--UU
-GAGUC--CU
#Saccoglossus_kowalevskii ---------- ---------- ---------C UCU-CC--CG
GUGCUC--UU
#Scypha_ciliata
---------- ---------- ---------- AGC-GU--GU GUGCUC--UU
#S_purpuratus
---------- ---------- ---------- UCG-CC--CG GUUCUC--UU
#Tenebrio_molitor
---------- ---------C AACUCAAUCC CGC-CG--CG GUGCUC--UU
#Xenopus_laevis
---------- ---------- ---------C CUC-CC--CG AUGCUC--UU
#Brachionus
UAUUGG-GUG UUU---UCGG UA-----GCC GGUAC-G-UU UACUUUGAGA
#Philodina
CAUCGA-UUG UCG---UCAG UU-----GCC AGAAC-G-UU UACUUUGAGA
#N_pseudemydis
AA--GG-GUG U-----ACGG AA------GG UGAACGG-AC UACUUUGAGA
#Centrorhynchus
CAUUGU-GUG UCUC--GGUG AA------GA GCCAC-U-GU CACUUUGAGA
#Moniliformis
UAUUGU-GUG UC----ACGU UU-----GAA CGGCCUU-UU UACUUUGAGA
#Acanthopleura
GACUGA-GUG UCU---CGGG G------GGC CAGAACG-UU UACUUUGAAA
#Anemonia
GACUGA-GUG UGC---GCGG GAG----UUG CGA--CG-UU UACUUUGAAA
#Anthopleura
GACUGA-GUG UGC---GCAG GUAC---UUG CGA--CG-UU UACUUUGAAA
#Artemia
AACCGA-GUG UCC---UGGG UG-----GCC GAUAC-G-UU UACUUUGAAC
#C_elegans
CG--CC-CUU CA----ACU- ------GCCA GCAG--G-UU UACCUUGAAU
#Eisenia_foetida
CGUUGA-GUG CCU---CGCG ------CGGC CGACAGA-UU UACUUUGAAA
#Eurypelma
CACCGG-UUG UCC---UGGG UG-----ACC GGCAC-G-UU UACUUUGAAA
#Haemonchus_placei CGGCUU-CUU
UA----GUG- -------GCU AGCGA-G-UU UACUUUGAAU
#Homo_sapiens
AGCUGA-GUG UCCC--GCGG GG-----CCC GAAGC-G-UU UACUUUGAAA
#Lanice
AACUGG-GUG UCU---CGGG CGGG--CCCG GAAC--G-UU UACUUUGAAA
#Lepidodermella
AACCGG-GUG CU----AUAG GCU---GCCA CAA-A-G-UU UACUCUGAAA
#Limicolaria_kambeul CGCUGA-GCG UCC---CGGG
U-----GGCC GGCG-CG-UU UACUUUGAAA
#Mnemiopsis_leidyi AACUGG-GUG
GGC---G?GG GAU----UCG CGA--CG-UU UACUUU?AAA
#Nematodirus_battus CG--AU-CUC
UUU---AGUG -------GCU AGCGA-G-UU UACUUUGAAU
#Opisthorchis_viverrini ACCGGG-UCG UCG---GGGG C-----GGAC
GGCAC-G-UU UACUUUGAAC
#Pellioditis_typica GUUCGC-AUC
UUC---AGUG ------GCCA GCGA--G--U UACUUUGACC
#Placopecten
GAUUGA-GUG UCU---CGGG U------GGC CGGAACA-UU UACUUUGA-A
#Priapulus_caudatus GACUGA-GUG
ACU---CGGG UU----GCCG GAA-C-G-UU UACUUUGAAA
#Saccharomyces_cerevisiae UGU-GG-CUC U-----UGGC GA----ACCA GGA-C-U-UU
UACUUUGAAA
#Saccoglossus_kowalevskii GGUUGA-GUG UCG---GGGG CG----GCCG GAA-C-G-UU
UACUUUGAAG
#Scypha_ciliata
CAUUGA-GUG UGC---ACGU AAC----UCG GGA-C-U-UU UACUUUGAAA
#S_purpuratus
AACUGA-GUC CCG---GGUG CG-----GCC GGAAC-G-UU UACUUUGAAA
#Tenebrio_molitor
CGUUGA-GUG UCG---AGGU GG-----GCC GGCAC-G-UU UACUUUGAAC
#Xenopus_laevis
GACUGA-GUG UCC---CGGG GG-----CCC GAAGC-G-UU UACUUUGAAA
#Brachionus
AAAUUAGAGU GCUUAAAGCA GCC------- ---------- ---UUAA---
#Philodina
AAAUUAGAGU GCUAAAAGCA GGC------- ---------- ---UCAC---
#N_pseudemydis
AAAUUAGCGU GCUCAAUGCA GGC------- ---------- ----GACU--
#Centrorhynchus
AACUCAGUGU GCUCAAUGCA GGC------- ---------- ---UAACU--
#Moniliformis
AAAUUAGCGU GCUUAACGCA GGC------- ---------- --GUUACA--
#Acanthopleura
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- --CCCGUC--
#Anemonia
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- ---CAGC---
#Anthopleura
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- ---CAGC---
#Artemia
AAAUUAGAGU GCUUAAAGCA GGUGC----- ---------- ---ACCGC--
#C_elegans
AAAUCAGAGU GCUCAAUACA AGC------- ---------- ---GCUU---
#Eisenia_foetida
AAAUUAGAGU GCUCAAAGCA GGC------- ---------- ---GCUUC--
#Eurypelma
AAAUUAGAGU GCUCAAAGCA GGC------- ---------- ---GUGUA--
#Haemonchus_placei AAAUUAGAGU
GCUCAGAACA AGC------- ---------- ---GUUU---
#Homo_sapiens
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- -CCGAGCC--
#Lanice
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- --GGCUC---
#Lepidodermella
AAAUUAGAGU GCUUAAAGCA AGC------- ---------- --CGUUUGU-
#Limicolaria_kambeul AAAUUAGAGU GUUCAAAGCA
GGC------- ---------- -CCCAGCU--
#Mnemiopsis_leidyi AAAUUAGAGU
GUUCAAAGCA GGC------- ---------- ---AGUC---
#Nematodirus_battus AAAUUAGAGU
GCUCAGAACA AGC------- ---------- ---GUUU---
#Opisthorchis_viverrini AAAUUUGAGU GCUCAAAGCA GGC-------
---------- ---CCGUGU-
#Pellioditis_typica AAAUCAGAGU
GCUCAAAACA GGC------- ---------- ---GAAA---
#Placopecten
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- --AAUUC---
#Priapulus_caudatus AAAUUAGAGU
GUUCAAAGCA GGC------- ---------- ---UUUUU--
#Saccharomyces_cerevisiae AAAUUAGAGU GUUCAAAGCA GGC------- ----------
---GUAUU--
#Saccoglossus_kowalevskii AAAUUAGAGU GUUCAAAGCA GGC--C---- ----------
---GCCAC--
#Scypha_ciliata
AAAUUAGAGU GUUCAAAGCA GGC------- ---------- ---CUUG---
#S_purpuratus
AAAUUGGAGU GUUCAAAGCA GGC--G---- ---------- ---CAACA--
#Tenebrio_molitor
AAAUUAGAGU GCUUAAAGCA GGCUAA---- ---------- --AACU----
#Xenopus_laevis
AAAUUAGAGU GUUCCAAGCA GGC------- ---------- --CGCGUC--
#Brachionus
---------- -----GCCUG AAUAA--UGU UGCAUGGAA- UAAUAGAAUA
#Philodina
---------- -----GCCUA UAUA---UAU UGCAUGGAA- UAAUGAAAUA
#N_pseudemydis
---------- -----GCUUG UAUAC--UUA UGCGUGGAA- UAAUGAGAAA
#Centrorhynchus
---------- -----GCUCG AAUUA--CGC UGCAUGGGA- UGAUGAAAUG
#Moniliformis
---------- -----GCUUG UAUAG--UGU UGCAUGGAA- UAAUGAAAUA
#Acanthopleura
---------- -----GCCUG AAUAA--UGG UGCAUGGAA- UAAUGGAAGA
#Anemonia
---------- -----GCUUG AAUAC--AUA AGCAUGGAA- UAAUGGAAUA
#Anthopleura
---------- -----GCUUG AAUAC--AUA AGCAUGGAA- UAAUGGAAUA
#Artemia
---------- -----GCCUG AAUAU--CAC AGCAUGGAA- UGAUGGAAUA
#C_elegans
---------- -----GCUUG AAUAG--CUC AUCAUGGAA- UAAUGAAACA
#Eisenia_foetida
---------- -----GCUUG UAUAG--UCG UGCAUGGAA- UAAUGGAAUA
#Eurypelma
---------- -----GCCUG AAUAA--UGG UGCAUGGAA- UAAUGGAAUA
#Haemonchus_placei ----------
-----GCUUG AAUGG--UCG AUCAUGGAA- UAAUAAAAGA
#Homo_sapiens
---------- -----GCCUG GAUAC--CGC AGCUAGGAA- UAAUGGAAUA
#Lanice
---------- -----GCCUG AAUAA--UGG UGCAUGGAA- UAAUAGAAGA
#Lepidodermella
---------- -----GCUUG AAUAC--UGU UGCAUGGAA- UAAUAGAAUA
#Limicolaria_kambeul ---------- -----GCCUG
AAUAA--UGG UGCAUGGAA- UAAUGGAAUA
#Mnemiopsis_leidyi ----------
-----GCU?G AAUAU--CUC AGCAUGGAA- UAAUAGAAUA
#Nematodirus_battus ----------
-----GCUUG AAUGG--UCG AUCAUGGAA- UAAUAAAAGA
#Opisthorchis_viverrini ---------- -----GCCUG AAAAU--UCU
UGCAUGGAA- UAAUGGAAUA
#Pellioditis_typica ----------
-----GCUUG UAUGA--UUU CUCGAGGAA- UAACAGAAUA
#Placopecten
---------- -----GCCUG AAUAA--UGG UGCAUGGAA- UAAUGGAAUA
#Priapulus_caudatus ----------
-----GCCUG AAUAA--UGG UGCAUGGAA- UAAUGGAAUA
#Saccharomyces_cerevisiae ---------- -----GCUCG AAUAU--AUU AGCAUGGAA-
UAAUAGAAUA
#Saccoglossus_kowalevskii ---------- -----GCCUG GAUAG--UCC AGCAUGGAA-
UAAUGGAAUA
#Scypha_ciliata
---------- -----GCUUG AAU?C--AUU AGCAUGGAA- UAAUGAAAUA
#S_purpuratus
---------- -----GCCUG AACAG--UAG AGCAUGGAA- UAAUGGAAUA
#Tenebrio_molitor
---------- ---UCGCCUG AAUAC-UGUG UGCAUGGAA- UAAUGGAAUA
#Xenopus_laevis
---------- -----GCCUG GAUAC--UUC AGCUAGGAA- UAAUGGAAUA
#Brachionus
GGA-CCU-CG GUUCU-AUUU UGUUGGUUU- ---------- ------UGUA
#Philodina
AGA-UCU-CG AUUUU-AUUU CGUUGGU--- ---------- ------UUUA
#N_pseudemydis
GGA-CCU-CG GUUCU-GUUU CGUUGGUU-- ---------- ------UCCG
#Centrorhynchus
GGG-UCU-CC GCUCC-GUUU CGUUGGUU-- ---------- ------UACG
#Moniliformis
GGA-CCU-CG GUUCU-GUUU UGUUGGUU-- ---------- ------UCCG
#Acanthopleura
GGA-CCU-CG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Anemonia
GGA-CUU-GG GUUCU-AUUU UGUUGGUU-- ---------- ------UCUG
#Anthopleura
GGA-CUU-GG GUUCU-AUUU UGUUGGUU-- ---------- -----UCGUG
#Artemia
GGA-CCU-CG GUCUU-AUUA UGUUGGUU-- ---------- ------UUCU
#C_elegans
GGA-CUU-CG GUUCU--UUU UGUUGGU--- ---------- ------UCUA
#Eisenia_foetida
GGA-CCU-CG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Eurypelma
GGA-CUU-CG UUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Haemonchus_placei GGA-CUU-CG
GUUCU--AUU UAUUGGU--- ---------- ------UCAG
#Homo_sapiens
GGA-CCG-CG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Lanice
GGA-CCU-UG GUUCU-AUUU UGUUGGUU-- ---------- ------UCCG
#Lepidodermella
GGA-CCU-CG GAUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Limicolaria_kambeul GGA-CCU-CG GUUCU-AUUU
UGUUGUUU-- ---------- -------UCG
#Mnemiopsis_leidyi GGA-CUU-UG
GUCUU-AUUU UGUUGGUU-- ---------- ------UCCG
#Nematodirus_battus GGA-CUU-CG
GUUCU--AUU UAUUGGU--- ---------- ------UCAG
#Opisthorchis_viverrini GGA-CUU-CG GUUCU-AUUU UGUUGGUU--
---------- ------UUCG
#Pellioditis_typica GGA-CUU-CG
GUUCU--UGU UGUUGGU--- ---------- ------UCCA
#Placopecten
GGA-CCU-CG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Priapulus_caudatus GGA-CCU-CG
GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Saccharomyces_cerevisiae GGA-CGUUUG GUUCU-AUUU UGUUGGUU-- ----------
------UCUA
#Saccoglossus_kowalevskii GGA-CCU-CG GU-CC-AUUG CGUUGGUC-- ----------
------UUAG
#Scypha_ciliata
GGA-CUU-UG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#S_purpuratus
GGA-CCU-CG GUUCU-AUUG CGUUGGUU-- ---------- ------UUAA
#Tenebrio_molitor
GGA-CCU-CG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Xenopus_laevis
GGA-CUC-CG GUUCU-AUUU UGUUGGUU-- ---------- ------UUCG
#Brachionus
GAGC-AUUGA GGUA-AUGAU UAAUAGGGAC AGA-CGGGGG CAUUCGU-AU
#Philodina
GAA--AUUGA GAUA-AUGAU UAAUAGGAUC AGA-GGGGGG CGUACGU-AC
#N_pseudemydis
GAAG-C-UGA GGUA-AUGAU UGAUAGGGAC AAA-CGGGGG CAUUCGU-AU
#Centrorhynchus
AAAG-C-AGA GAAC-AUGAU UAAUCGGGAC AGA-CGGGGG CAUUCGU-AU
#Moniliformis
GAAG-C-UGA GGUA-AUGAU UAAUAGGGAC AGA-CGGG?G ?AUUCGU-AU
#Acanthopleura
GAA-GU-CGA GGUA-AUGAU UAAGAGGGAC AGA-CGGGGG CAUUCGU-AU
#Anemonia
GAAC-C-UGA AGUA-AUGAU UAAGAGGGAC AGU-UGGGGG CAUUCGU-AU
#Anthopleura
GAAC---CGA AGUA-AUGAU UAAGAGGGAC AGU-UGGGGG CAUUCGU-AU
#Artemia
GGAC-U-UGA GGUA-AUGGU UAACAGAGAC AGA-CGGGGG CAUUCGU-AC
#C_elegans
GAAC---UGA UUUA-AUGGU UAAGAGGGAC AAACCGGGGG CAUUCGU-AU
#Eisenia_foetida
GAAC-U-UGA GGUA-AUGAU UAAGAGGGAC AGA-CGGGGG CAUUCGU-AU
#Eurypelma
GAAU-A-CGA GGUA-AUGAU UAAGAGGGAC AGA-CGGGGG CAUUCGU-AU
#Haemonchus_placei GAAC---UGA
AAUA-AUGGU UAAGAGGGAC AAUUCGGGGG CAUUCGU-AU
#Homo_sapiens
GAAC---UGA GGCC-AUGAU UAAGAGGGAC GGC-CGGGGG CAUUCGU-AU
#Lanice
GAAC-U-GGA GGUA-AUGAU UGAGAGGGAC UGC-CGGGGG CAUUCGU-AU
#Lepidodermella
GAGU---CGA GGUA-AUGAU UAAGAGGGAC AGA-CGGGGG CAUUCGU-AU
#Limicolaria_kambeul GAAC-U-GGA GGUA-AUGAU
UAACAGGGAC AAA-CGGGGG CAUUCGU-AU
#Mnemiopsis_leidyi AGAC---CGA
AGUA-AUGAU UAAUAGGGAC AGU-UGGGGG CAUUCGU-AU
#Nematodirus_battus GAAC---UGA
AAUA-AUGGU UAAGAGGGAC AAUUCGGGGG CAUUCGU-AU
#Opisthorchis_viverrini GAUC---CGA AGUA-AUGGU UAAAAGGGAC
AGA-CGGGGG CAUUUGU-AU
#Pellioditis_typica GAAU-CGU--
-UUA-AUGGU UAAGAGGGAC AAUUCGGGGG CAGCCGU-AU
#Placopecten
GAAC-U-UGA GGUA-AUGAU UAUGAGGGAC AGA-CGGGGG CAUUCGU-AU
#Priapulus_caudatus GAAC-A-UGA
GGAA-AUGAU UAAGAGGAAC AGA-CGGGGG CAUUCGU-AC
#Saccharomyces_cerevisiae GGAC---CAU CGUA-AUGAU UAAUAGGGAC GGU-CGGGGG
CAUCGGU-AU
#Saccoglossus_kowalevskii GAAC-G-CGA GGUA-AUGAU CGAGAGGGAC UGA-CGGGGG
CAUUCGU-AU
#Scypha_ciliata
GAAC---CAA GGUA-AUGAC ?AAUAGGGAC AGU-UGGGGG CAUUCGU-AU
#S_purpuratus
GAGU-C-CGA GGUA-AUGAU UCACAGGGAC UGA-CGGGGG CAUUCGU-AU
#Tenebrio_molitor
GAAUUU-UGA GGUA-AUGAU UAAUAGGAAC GGA-UGGGGG CAUUCGU-AU
#Xenopus_laevis
GAAC---UGG GGCC-AUGAU UAAGAGGGAC GGC-CGGGGG CAUUCGU-AU
#Brachionus
UGCGGUG-UU AGAGGUGAAA UUCUUGGAUC GCCGCAAG-A CGAACAAC--
#Philodina
UGUGGUG-UG AGAGGUGAAA UUCUUGGAUC GCCAC----A GGACGAAC-A
#N_pseudemydis
UGUGGUG-UU AGAGGUGAAA UUCUGUGAUC ACCGCAAG-A CGAGCUAC--
#Centrorhynchus
UGCGGUG-CU AGAAGUGAAA UUCUGUGACC AUCGCAAG-A CGAACAAC--
#Moniliformis
UGUGGUG-UU AGAGGUGAAA UUCUUGGAUC ACCGCCAG-A CGAACAAC--
#Acanthopleura
UACGGUG-UU AGAGGUGAAA UUCUUGGAUC GCCGUAAG-A CGAACUAC--
#Anemonia
U-CGUUG-UC AGAGGUGAAA UUCUUGGAUU UACGAAAG-A CGAACUAC--
#Anthopleura
UUCGUUG-UC AGAGGUGAAA UUCUUGGAUU UACGAAAG-A CGAACUAC--
#Artemia
UGCGACG-CU AGAGGUGAAA UUCUUGGACC GUCGCAAG-A CGAACAAC--
#C_elegans
CAUUACG-CG AGAGGUGAAA UUCGUGGACC GUAGUGAG-A CGCCCAA-C-
#Eisenia_foetida
UACGGUG-UC AGAGGUGAAA UUCUUGGAUC GCCGUAAG-A CGAACUAC--
#Eurypelma
UGCGACG-CU AGAGGUGAAA UUCUUGGACC GUCGCAAG-A CGAACUAC--
#Haemonchus_placei CCCUGCG-CG
AGAGGUGAAA UUCGUGGACC GCAGGGGG-A CGCCCUAA--
#Homo_sapiens
UGCGCCG-CU AGAGGUGAAA UUCUUGGACC GGCGCAAG-A CGGACCAG--
#Lanice
UACGGUG-UU AGAGGUGAAA UUCUUGGAUC GCCGUAAG-A CGAACGAG--
#Lepidodermella
UGCGCCG-UU AGAGGUGAAA UUCUUGGAUC GGCGCAAG-A CGAACAAC--
#Limicolaria_kambeul UGCGGCG-UU AGAGGUGAAA
UUCUUGGAUC GCCGCAAG-A CGAGCUAC--
#Mnemiopsis_leidyi UUCAUUG-UC
AGAGGUGAAA UUCUUGGAUU UAUGAAAG-A CGAACUUC--
#Nematodirus_battus CCCUGCG-CG
AGAGGUGAAA UUCGUGGACC GCAGGGGG-A CGCCCUAA--
#Opisthorchis_viverrini GGCGGUG-UU AGAGGUGAAA UUCUUGGAUC
ACCGCCAG-A CAAACUAC--
#Pellioditis_typica CCUCGGG-CG
AGGGGUGAAA UCCGUAGACC CUGAGGAG-A CGACCAAU--
#Placopecten
UACGGUG-UU AGAGGUGAAA UUCUUGGAUC GCCGUAAG-A CGAACUAC--
#Priapulus_caudatus UGCUGCG-UU
AGAGGUGAAA UUCUUGGAUC GUAGCAAG-A CGAACAAC--
#Saccharomyces_cerevisiae UCAAUUG-UC -GAGGUGAAA UUCUUGGAUU UAUUGAAG-A
CUAACUAC--
#Saccoglossus_kowalevskii UGCGGCG-UU AGAGGUGAAA UUCUUGGAUC GUCGCAA---
-GAACGAC--
#Scypha_ciliata
UCAAUUG-UC AGAGGUGAAA UUCUUGGAUU UAUGGAAG-A CGAACAAC--
#S_purpuratus
UGCGGUG-UG AGAGGUGAAA UUCUUGG-UC GCCGCAAG-A CGACCGGU--
#Tenebrio_molitor
UGCGACG-UU AGAGGUGAAA UUCUUGGAUC GUCGCAAG-A CGGACAGA--
#Xenopus_laevis
UGUGCCG-CU AGAGGUGAAA UUCUUGGACC GGCGCAAG-A CGAACCAA--
#Brachionus
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Philodina
GCAGCGA--A CGGUUCGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#N_pseudemydis
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Centrorhynchus
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--GUUAAUC AC-GAACGAA
#Moniliformis
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Acanthopleura
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Anemonia
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Anthopleura
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Artemia
UGCGAACAAG U-U--UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#C_elegans
AGCGAAA--G CAUU-UGCCA AGAAUGUCUU C--AUUAAUC AA-GAACGAA
#Eisenia_foetida
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Eurypelma
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Haemonchus_placei AGCGAAA--G
CAUU-UGCCA AGAAUGUCUU C--AUUAAUC AA-GAACGAA
#Homo_sapiens
AGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Lanice
?GCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Lepidodermella
UGCG-AA--G CAUU-UGCCA AGGAUGUUUU C--AUUAAUC AA-GAACGAA
#Limicolaria_kambeul UGCGAAA--G CAUU-UGUCA
AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Mnemiopsis_leidyi UGCGAAA--G
CAUU-UGCCA AGGAUGUUUU C--AUUAAUC AA-GAACGAA
#Nematodirus_battus AGCGAAA--G
CAUU-UGCCA AGAAUGUCUU C--AUUAAUC AA-GAACGAA
#Opisthorchis_viverrini AGCGAAA--G CAUU-UGCCA AGGAUGUUUU
C--AUUGAUC UG-GAGCGAA
#Pellioditis_typica AGCGAAA--G
CAGC-UGCCA AGAAUGUCUC C--AUUAAUC AA-GAACGAA
#Placopecten
UGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAUCGAA
#Priapulus_caudatus AGCGAAA--G
CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Saccharomyces_cerevisiae UGCGAAA--G CAUU-UGCCA AGGACGUUUU C--AUUAAUC
AA-GAACGAA
#Saccoglossus_kowalevskii UGCGAAC--G --UU-UGCCA AGAAUGUUUU C--AUUGAUC
AA-GAACGAA
#Scypha_ciliata
UGCGAAA--G CAUU-UGCCA AGGAUGUUUU C--AUUAAUC AA-GAACGAA
#S_purpuratus
AGCGAAA--- CGUU-UGCCA AGAAUGUAUU C--AUUGAUC AA-GAACGAA
#Tenebrio_molitor
AGCGAAA--G CAUU-UGCCA AAAACGCUUU C--AUUGAUC AA-GAACGAA
#Xenopus_laevis
AGCGAAA--G CAUU-UGCCA AGAAUGUUUU C--AUUAAUC AA-GAACGAA
#Brachionus
AGUUGGAGGU UCGAAGACGA UUAGAUACCG UCCUAGUUCC AACCAUAAAC
#Philodina
AGUUUGAGGU UCGAAGACGA UUAGAUACCG UCCUAGUUCA AACCAUAAAC
#N_pseudemydis
AGUUAGAGUU UCGAAGACGA UUAGAUACCG UCCUAGUUCU AACUAUAAAC
#Centrorhynchus
AGUUAGAGGA UCGAAGACGA UUAGAUACCG UCCUAGUUUU AACGGUAAAC
#Moniliformis
AGUUAGAGGU UCGAAGACGA UUAGAUACCG UCCUAGUUCU AACUAUAAAC
#Acanthopleura
AGUCAGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCU GACCAUAAAC
#Anemonia
AGUUAGAGGC UCGAAGACGA UCAGAUACCG UCCUAGUUAU AACCAUAAAC
#Anthopleura
AGUUAGAGGC UCGAAGACGA UCAGAUACCG UCCUAGUUCU AACCAUAAAC
#Artemia
AGUUAGAGGU UCGAAGGCGA UCAGAUACCG CCCUAGUUCU AACCAUAAAC
#C_elegans
AGUCAGAGGU UCGAAGGCGA UUAGAUACCG CCCUAGUUCU GACCGUAAAC
#Eisenia_foetida
AGUCAGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCU GACCAUAAAC
#Eurypelma
AGUUAGAGGU UCGAAGGCGA UCAGAUACCG CCCUAGUUCU AACCAUAAAC
#Haemonchus_placei AGUCAGAGGU
UCGAAGGCGA UUAGAUACCG CCCUAGUUCU GACCGUAAAC
#Homo_sapiens
AGUCGGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCC GACCAUAAAC
#Lanice
AGUCAGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCU GACCAUAAAC
#Lepidodermella
AGUCAGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCU GACCAUAAAC
#Limicolaria_kambeul AGUCAGAGGC GCGAAGACGA
UCAGAUACCG UCGUAGUUCU GACCAUAAAC
#Mnemiopsis_leidyi AGUUGGAGGC
UCGAAGACGA UCAGAUACCG UCCUAGUUCC AACCAUAAAC
#Nematodirus_battus AGUCAGAGGU
UCGAAGGCGA UUAGAUACCG CCCUAGUUCU GACCGUAAAC
#Opisthorchis_viverrini AGUCAGAGGU UCGAAGACGA UCAGAUACCG
UCCUAGUUCU GACCAUAAAC
#Pellioditis_typica AGUCAGAGGU
UCGAAGGCGA UUAGAUACCG CCCUAGUUCU GACCGUAAAC
#Placopecten
AGUCAGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCU GACCAUAAAC
#Priapulus_caudatus AGUCAGAGGU
UCGAAGGUGA UCAGAUACCG CCCUAGUUCU GACCAUAAAC
#Saccharomyces_cerevisiae AGUUAGGGGA UCGAAGAUGA UCUGGUACCG UCGUAGUCUU
AACCAUAAAC
#Saccoglossus_kowalevskii AGUCGGAGGU UCGAAGACGA UCAGAUA-CG UC-UAGUUCC
GACCGUAAAC
#Scypha_ciliata
AGUUGGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCC AACCAUAAAC
#S_purpuratus
AGUUACAGGU UCGAAGGCGA UACGAUACCG CCCUAGUUCU AACCAUAAAC
#Tenebrio_molitor
AGUUAGAGGU UCGAAGGCGA UCAGAUACCG CCCUAGUUCU AACCAUAAAC
#Xenopus_laevis
AGUCGGAGGU UCGAAGACGA UCAGAUACCG UCGUAGUUCC GACCAUAAAC
#Brachionus
GAUGCCAACU -AGCG--AUU AGCUGCU-GU U--AUUUUUA C-GA-CACAG
#Philodina
GUUGCCAACU -GUC---UUU UAGAUGCGGU U--AUUUAUA U-GA-CUCAU
#N_pseudemydis
UAUGCCAACU -GGG--CAUC UGGCGAU-UG C--AUUA--A U-GC-AUCGG
#Centrorhynchus
UGUGCCGGCC -AGG---AAU UCGCCAA-CG C--AAUA--A --CU-UGGCG
#Moniliformis
UAUGCCAACU -GGGG--AUC CGUCGGUUGC C--AUUU-GU A-GG-CUCGG
#Acanthopleura
GAUGCCAACU -AGCG--AUC CGCCGGA-GU U--GUUUCAA U-GA-CUCGG
#Anemonia
GAUGCCGACU -AGGG--AUC AGAGAGU-GU U---AUUGGA U-GA-CCUCU
#Anthopleura
GAUGCCGACU -AGGG--AUC AGAGAGU-GU U---AUUGGA U-GA-CCUCU
#Artemia
GAUGCCAACC -AGCG--AUC CGCGGAC-GU U--ACUUGAA U-GA-CUCCG
#C_elegans
GAUGCCAUC- UCGCG--AUU CGGAGG--GU U------UUU --GC-CCUGC
#Eisenia_foetida
GAUGUCGACU -GGCG--AUC CGCGGAC-GU C--GCUUCUA U-GA-CCCCG
#Eurypelma
GAUGCCAACC -AGCG--AUC CGCCUGA-GU U--CCUCAAA U-GA-CUCGG
#Haemonchus_placei UAUGCCAUCU
-AGCG--AUC CGAUGG--GG U---AUAGUU --GC-CUUGU
#Homo_sapiens
GAUGCCGACC -GGCG--AUG CGGCGGC-GU U--AUUCCCA U-GA-CCCGC
#Lanice &nbs